last update: 2019 Sep 24

Wippich F., Ephrussi A.  Transcript specific mRNP capture from Drosophila egg-chambers for proteomic analysis.
Methods. 2019 Sep 5. pii: S1046-2023(18)30489-4. doi:10.1016/j.ymeth.2019.09.001. [epub ahead of print]

Durdevic Z., Ephrussi A. Germ Cell Lineage Homeostasis in Drosophila requires the Vasa RNA Helicase.
Genetics. 2019 Sep 4. pii: genetics.302558.2019. doi: 10.1534/genetics.119.302558. [Epub ahead of print]

Obrdlik A., Lin G., Habermann N., Ule J., Ephrussi A. The Transcriptome-wide Landscape and Modalities of EJC Binding in  Adult Drosophila. 
Cell Rep. 2019 Jul 30;28(5):1219-1236.e11. doi: 10.1016/j.celrep.2019.06.088.

Heber S., Gáspár I., Tants J.-N., Günther J., Fernandez Moya S., Janowski R., Ephrussi A., Sattler M., Niessing D. Staufen2-mediated RNA recognition and localization requires combinatorial action of multiple domains
Nature Communications 10, Article number:1659 (2019)

Olgeiser L., Haag C., Boerner S., Ule J., Busch A., Koepke J., König J., Feldbrügge M.*, Zarnack K.*. The key protein of endosomal mRNP transport Rrm4 binds translational landmark sites of cargo mRNAs.
EMBO Rep. 2018: pii: e46588. *shared corresponding authorship

Béthune J., Jansen R.P., Feldbrügge M.*, Zarnack K*. Membrane-associated RNA-binding proteins orchestrate organelle-coupled translation.
Trends in Cell Biol. 2018: In press  *shared corresponding authorship

Chamiolo J., Gaspar I., Ephrussi A., Seitz O.  In Vivo Visualization and Function Probing of Transport mRNPs Using Injected FIT Probes. 
Methods Mol Biol. 2018: 1649:273-287. doi: 10.1007/978-1-4939-7213-5_18.

Durdevic, Z., Pillai, R.S., Ephrussi, A.   Transposon silencing in the Drosophila female germline ensures genome stability in progeny embryos
Life Science Allicance 2018 doi: 10.26508/lsa.201800179

Gaspar I., Hövelmann F., Chamiolo J., Ephrussi A., Seitz O.  Quantitative mRNA Imaging with Dual Channel qFIT Probes to Monitor Distribution and Degree of Hybridization. 
ACS Chem Biol. 2018 Feb 7. doi: 10.1021/acschembio.7b01007.

Gáspár, I.*, Wippich, F. and Ephrussi, A.*  Terminal Deoxynucleotidyl Transferase Mediated Production of Labeled Probes for Single-molecule FISH or RNA Capture
Bio-protocol 2018 8(5): e2750. doi: 10.21769/BioProtoc.2750. 

Gáspár, I.*, Ephrussi, A.* (2017). RNA localization feeds translation
Science 2017 357:1235-1236. doi: 10.1126/science.aao5796.

Gáspár, I.*, Ephrussi, A.* (2017). Ex vivo ooplasmic extract from developing oocytes for quantitative TIRF microscopy analysis.
Bio Protoc. 2017 Jul 5;7(13). pii: e2380. doi: 10.21769/BioProtoc.2380.

Syed MI, Moorthy BT, Jenner A, Fetka I, Jansen RP.
Signal sequence-independent targeting of MID2 mRNA to the endoplasmic reticulum by the yeast RNA-binding protein Khd1p.
FEBS Lett. 2018 May 17. doi: 10.1002/1873-3468.13098

Berger SM, Fernández-Lamo I, Schönig K, Fernández Moya SM, Ehses J, Schieweck R, Clementi S, Enkel T, Grothe S, von Bohlen Und Halbach O, Segura I, Delgado-García JM, Gruart A, Kiebler MA, Bartsch D. Forebrain-specific, conditional silencing of Staufen2 alters synaptic plasticity, learning, and memory in rats.
Genome Biol. 2017 Nov 17;18(1):222.

Niessing D, Jansen RP, Pohlmann T, Feldbrügge M. mRNA transport in fungal top models.
Wiley Interdiscip Rev RNA. 2017 Oct 10. doi: 10.1002/wrna.1453

Follwaczny P, Schieweck R, Riedemann T, Demleitner A, Straub T, Klemm AH, Bilban M, Sutor B, Popper B, Kiebler MA. Pumilio2 deficient mice show a predisposition for epilepsy.
Dis Model Mech. 2017 Oct 18. pii: dmm.029678.

Sharangdhar T, Sugimoto Y, Heraud-Farlow J, Fernández-Moya SM, Ehses J, Ruiz de Los Mozos I, Ule J, Kiebler MA. A retained intron in the 3'-UTR of Calm3 mRNA mediates its Staufen2- and activity-dependent localization to neuronal dendrites.
EMBO Rep. 2017 Aug 1. pii: e201744334.

Gaspar I, Wippich F, Ephrussi A. Enzymatic production of single molecule FISH and RNA capture probes.
RNA. 2017 Jul 11. pii: rna.061184.117.

Botti V, McNicoll F, Steiner MC, Richter FM, Solovyeva A, Wegener M, Schwich OD, Poser I, Zarnack K, Wittig I, Neugebauer KM, Müller-McNicoll M.
Cellular differentiation state modulates the mRNA export activity of SR proteins.
J Cell Biol. 2017 Jul 3;216(7):1993-2009.

Bauer KE, Kiebler MA, Segura I. Visualizing RNA granule transport and translation in living neurons.
Methods. 2017 Jun 15. pii: S1046-2023(16)30423-6. (Review)

Jeske M, Müller CW, Ephrussi A. The LOTUS domain is a conserved DEAD-box RNA helicase regulator essential for the recruitment of Vasa to the germ plasm and nuage.
Genes Dev. 2017 May 1;31(9):939-952.

Haag, C., Pohlmann, T., Feldbrügge, M.  The ESCRT regulator Did2 maintains the balance between long-distance endosomal transport and endocytic trafficking.
PLoS Genet 2017 13(4): e1006734.

Haberman N, Huppertz I, Attig J, König J, Wang Z, Hauer C, Hentze MW, Kulozik AE, Le Hir H, Curk T, Sibley CR, Zarnack K*, Ule J*. Insights into the design and interpretation of iCLIP experiments.
Genome Biol. 2017 Jan 16;18(1):7.

Edelmann FT, Schlundt A, Heym RG, Jenner A, Niedner-Boblenz A, Syed MI, Paillart JC, Stehle R, Janowski R, Sattler M, Jansen RP, Niessing D. Molecular architecture and dynamics of ASH1 mRNA recognition by its mRNA-transport complex.
Nat Struct Mol Biol. 2017 Feb;24(2):152-161.

Gáspár I, Sysoev V, Komissarov A, Ephrussi A. An RNA-binding atypical tropomyosin recruits kinesin-1 dynamically to oskar mRNPs.
EMBO J. 2017 Feb 1;36(3):319-333.

Lazzaretti D, Veith K, Kramer K, Basquin C, Urlaub H, Irion U, Bono F. The bicoid mRNA localization factor Exuperantia is an RNA-binding pseudonuclease.
Nat Struct Mol Biol. 2016 Aug;23(8):705-13.

Zander S, Baumann S, Weidtkamp-Peters S, Feldbrügge M. Endosomal assembly and transport of heteromeric septin complexes promote septin cytoskeleton formation.
J Cell Sci. 2016 Jul 15;129(14):2778-92.

Jambor H, Mejstrik P, Tomancak P. Rapid Ovary Mass-Isolation (ROMi) to Obtain Large Quantities of Drosophila Egg Chambers for Fluorescent In Situ Hybridization.
Methods Mol Biol. 2016;1478:253-262.

Schieweck R, Popper B, Kiebler MA. Co-Translational Folding: A Novel Modulator of Local Protein Expression in Mammalian Neurons?
Trends Genet. 2016 Dec;32(12):788-800. (Review)

Sysoev VO, Fischer B, Frese CK, Gupta I, Krijgsveld J, Hentze MW, Castello A, Ephrussi A. Global changes of the RNA-bound proteome during the maternal-to-zygotic transition in Drosophila.
Nat Commun. 2016 Jul 5;7:12128. 

Ehses J, Kiebler MA, Fernández-Moya SM. RNA Transport: From Head to Toe in Radial Glial Cells.
Curr Biol. 2016 Dec 19;26(24):R1285-R1287. (Review)

Baumann S, Zander S, Weidtkamp-Peters S, Feldbrügge M. Live cell imaging of septin dynamics in Ustilago maydis.
Methods Cell Biol. 2016;136:143-59. (Review)


Forschergruppe 2333
Prof. Dr. Dierk Niessing (Sprecher)
Ulm University - Institute of Pharmaceutical Biotechnology
James Franck Ring N27
89081 Ulm
Phone: +49 89 3187 2176



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